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Washington University Department of Biology

Collected Publications - 2008

Return to top Biology Dept. Collected Publications page

Faculty names are in bold type.

Proxy Server Login for Off-Campus Access to many resources below.

We are currently gathering citations and copies for this collection. This page and our collected volume probably won't be complete until Summer, 2009. Submissions and corrections are welcome!

Paper copies of these articles will be available in the Biology Library except where [missing from collected volume] is noted.

  1. Allen GE. 2008. Carson, Hampton Lawrence. pp. 59-64 IN New Dictionary of Scientific Biography Gale. More info.
  2. Allen GE. 2008. Genetics, History of. pp. 34-40 IN Encyclopedia of Race and Racism, J. H. Moore, ed. Macmillan. More info.
  3. Allen GE. 2008. Hamburger, Viktor. pp. 216-225 IN New Dictionary of Scientific Biography Gale. More info.
  4. Aponte JC, Estevez Y, Gilman RH, Lewis WH, Rojas R, Sauvain M, Vaisberg AJ, Hammond GB. 2008. Anti-infective and cytotoxic compounds present in Blepharodon nitidum. Planta Medica 74:407-410. Abstract & fulltext for subscribers; WU does not subscribe online.
  5. Aponte JC, Vaisberg AJ, Rojas R, Caviedes L, Lewis WH, Lamas G, Sarasara C, Gilman RH, Hammond GB. 2008. Isolation of cytotoxic metabolites from targeted peruvian amazonian medicinal plants. J Nat Prod 71:102-5. PubMed abstract & fulltext for subscribers.
  6. Arkus KAJ, Jez JM. 2008. An integrated protein chemistry laboratory chlorophyll and chlorophyllase. Biochemistry and Molecular Biology Education 36:125-128. Abstract & fulltext for subscribers.
  7. Bawa KS, Balachander G, Raven P. 2008. A case for new institutions. Science 319:136. PubMed citation & fulltext for subscribers.
  8. Beachy RN, Fedoroff NV, Goldberg RB, McHughen A. 2008. The burden of proof: a response to Rosi-Marshall et al. Proc Natl Acad Sci U S A. 105:E9; author reply E11. PubMed citation & fulltext for subscribers, free 6 months after publication.
  9. Beck JB, Schmuths H, Schaal BA. 2008. Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics. Mol Ecol 17:902-15. PubMed abstract & fulltext for subscribers.
  10. Bekaert S, Storozhenko S, Mehrshahi P, Bennett MJ, Lambert W, Gregory JF 3rd, Schubert K, Hugenholtz J, Van Der Straeten D, Hanson AD. 2008. Folate biofortification in food plants. Trends Plant Sci. 13:28-35. PubMed abstract & fulltext for subscribers.
  11. Bercovici S, Geiger D, Shlush L, Skorecki K, Templeton A. 2008. Panel construction for mapping in admixed populations via expected mutual information. Genome Res 18:661-7. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  12. Berg RH, Beachy RN. 2008. Fluorescent protein applications in plants. Methods Cell Biol 85:153-77. PubMed abstract & fulltext for subscribers.
  13. Bergman TJ, Phillips-Conroy JE, Jolly CJ. 2008. Behavioral variation and reproductive success of male baboons (Papio anubis x Papio hamadryas) in a hybrid social group. Am J Primatol 70:136-47. PubMed abstract & fulltext for subscribers.
  14. Brudvig LA. 2008. Large-scale experimentation and oak regeneration. Forest Ecology and Management 255:3017-3018. Abstract & fulltext for subscribers; WU does not subscribe.
  15. Buchko GW, Robinson H, Pakrasi HB, Kennedy MA. 2008. Insights into the structural variation between pentapeptide repeat proteins-Crystal structure of Rfr23 from Cyanothece 51142. J Struct Biol 162:184-92 PubMed abstract & fulltext for subscribers.
  16. Burns JH. 2008. Demographic performance predicts invasiveness of species in the Commelinaceae under high-nutrient conditions. Ecol Appl 18:335-346. Abstract & fulltext for subscribers.
  17. Chen H, Zhang JY, Neff MM, Hong SW, Zhang HY, Deng XW, Xiong LM. 2008. Integration of light and abscisic acid signaling during seed germination and early seedling development. Proc Natl Acad Sci U S A 105:4495-500. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  18. Chen M, Zhang Y, Blankenship RE. 2008. Nomenclature for membrane-bound light-harvesting complexes of cyanobacteria. Photosynth Res 95:147-54. PubMed abstract | Fulltext for subscribers.
  19. Dorland EM. 2008. Visualization and education network on ning: The first six months. Abstracts of Papers, 235th ACS National Meeting, New Orleans, LA, United States, April 6-10, 2008. p. CHED-764.
  20. Freeman GM, Webb AB, An S, Herzog ED. 2008. For whom the bells toll: Networked circadian clocks. Sleep Biol Rhythms 6:67-75. Abstract & fulltext for subscribers.
  21. Gifford ME. 2008. Divergent character clines across a recent secondary contact zone in a Hispaniolan lizard. J Zool 274:292-300.Abstract & fulltext for subscribers.
  22. Gifford ME, Herrel A, Mahler DL. 2008. The evolution of locomotor morphology, performance, and anti-predator behaviour among populations of Leiocephalus lizards from the Dominican Republic. Biol J Linnean Soc 93:445-456. Abstract & fulltext for subscribers.
  23. Gu CC, Yu K, Ketkar S, Templeton AR, Rao DC. 2008. On transferability of genome-wide tagSNPs. Genet Epidemiol 32:89-97. PubMed abstract & fulltext for subscribers.
  24. Haeusser DP, Levin PA. 2008. The great divide: coordinating cell cycle events during bacterial growth and division. Curr Opin Microbiol 11:94-9. PubMed abstract & fulltext for subscribers.
  25. Halsey ME, Olsen KM, Taylor N, Chavarriaga-Aguirre P. 2008. Reproductive biology of cassava (Manihot esculenta Crantz) and isolation of experimental field trials. Crop Science 48:49-58. Abstract & fulltext for subscribers - WU does not subscribe.
  26. Johnson MA, Leal M, Schettino LR, Lara AC, Revell LJ, Losos JB. 2008. A phylogenetic perspective on foraging mode evolution and habitat use in West Indian Anolis lizards. Animal Behav 75:555-563. Abstract & fulltext for subscribers.
  27. Joo S, Liu Y, Lueth A, Zhang, S. 2008. MAPK phosphorylation-induced stabilization of ACS6 protein is mediated by the non-catalytic C-terminal domain, which also contains the cis-determinant for rapid degradation by the 26S proteasome pathway. Plant J 54:129-140. Abstract & fulltext for subscribers, free 18 months after publication.
  28. Liberton M, Pakrasi HB. 2008. Membrane systems in cyanobacteria, pp. 271-288 IN The Cyanobacteria: Molecular Biology, Genomics and Evolution, ed. by E. Flores, A. Herrero. Horizon Scientific Press. More book info.
  29. Lough AN, Roark LM, Kato A, Ream TS, Lamb JC, Birchler JA, Newton KJ. 2008. Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize. Genetics 178:47-55. PubMed abstract & fulltext for subscribers; free 3 months after publication.
  30. Morris WF, Pfister CA, Tuljapurkar S, Haridas CV, Boggs CL, Boyce MS, Bruna EM, Church DR, Coulson T, Doak DF, Forsyth S, Gaillard JM, Horvitz CC, Kalisz S, Kendall BE, Knight TM, Lee CT, Menges ES. 2008. Longevity can buffer plant and animal populations against changing climatic variability. Ecology 89:19-25. Abstract & fulltext for subscribers.
  31. Orrock JL, Witter MS, Reichman OJ. 2008. Apparent competition with an exotic plant reduces native plant establishment. Ecology 89:1168–1174. Abstract & fulltext for subscribers.
  32. Perroud PF, Quatrano RS. 2008. BRICK1 is required for apical cell growth in filaments of the moss Physcomitrella patens but not for gametophore morphology. Plant Cell 20:411-22. PubMed abstract & fulltext for subscribers, free 12 months after publication.
  33. Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto SI, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL. 2008. The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants. Science 319 (5859): 64-69. PubMed abstract & fulltext for subscribers | In the news: Moss genome tells of origin of land plants, WUSTL researchers spearhead key genome initiative: Findings promising for plant science, agriculture and human health.
  34. Richard-Fogal CL, Frawley ER, Kranz RG. 2008. Topology and function of CcmD in cytochrome c maturation. J Bacteriol 190:3489-93. PubMed abstract & fulltext for subscribers; free 4 months after publication.
  35. Riddle NC, Birchler JA. 2008. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Theor Appl Genet 116(4):563-76. PubMed abstract & fulltext for subscribers.
  36. Riddle NC, Leung W, Haynes KA, Granok H, Wuller J, Elgin SC. 2008. An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster. Genetics 178:1177-91. PubMed abstract & fulltext for subscribers, free 3 months after publication.
  37. Riddle NC, Elgin SCR. 2008. A role for RNAi in heterochromatin formation in Drosophila. Curr Top Microbiol Immunol 320:185-209. PubMed abstract | Fulltext on Springerlink for subscribers.
  38. Roose JL, Pakrasi HB. 2008. The PSB27 protein facilitates manganese cluster assembly in photosystem II. J Biol Chem 283:4044-4050. PubMed abstract & fulltext for subscribers; free 1 year after publication.
  39. Sabri M, Caza M, Proulx J, Lymberopoulos MH, Brée A, Moulin-Schouleur M, Curtiss R 3rd, Dozois CM. 2008. Contribution of the SitABCD, MntH, and FeoB metal transporters to the virulence of an avian pathogenic Escherichia coli (APEC) O78 strain.Infect Immun 76:601-11. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  40. Sanger TJ, Losos JB, Gibson-Brown JJ. 2008. A developmental staging series for the lizard genus Anolis: A new system for the integration of evolution, development, and ecology. J Morphol 269:129-37. PubMed abstract & fulltext for subscribers.
  41. Sanger TJ, Hime PM, Johnson MA, Diani J, Losos JB. 2008. Laboratory protocols for husbandry and embryo collection of Anolis lizards. Herpetological Review 39:58-63.
  42. Shimizu KK, Reininga JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Purugganan MD. 2008. Retraction of Shimizu et al., Science 306 (5704) 2081-2084. (2004) Science. 320:176. PubMed citation & fulltext for subscribers.
  43. Stein PS. 2008. Motor pattern deletions and modular organization of turtle spinal cord. Brain Res Rev 57:118-124. PubMed abstract & fulltext for subscribers.
  44. Stöckel J, Welsh EA, Liberton M, Kunnvakkam R, Aurora R, Pakrasi HB. 2008. Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes. Proc Natl Acad Sci U S A 105:6156-61 PubMed abstract & fulltext for subscribers, free 6 months after publication.
  45. Strasburg JL, Gross BL. 2008. Adapting to winter in wheat: a long-term study follows parallel phenotypic and genetic changes in three experimental wheat populations. Mol Ecol 17:716-8. PubMed abstract & fulltext for subscribers.
  46. Street IH, Shah PK, Smith AM, Avery N, Neff MM. 2008. The AT-hook containing proteins SOB3/AHL29 and ESC/AHL27 are negative modulators of hypocotyl growth in Arabidopsis. Plant J 54:1-14 PubMed abstract & fulltext for subscribers, free 18 months after publication.
  47. Suga N. 2008. The neural circuit for tone-specific plasticity in the auditory system elicited by conditioning. Learn Mem 15(4):198-201; author reply 202-7. PubMed citation & fulltext for subscribers; freely available 1 year after publication.
  48. Suga N. 2008. Role of corticofugal feedback in hearing. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194:169-83. PubMed abstract & fulltext for subscribers.
  49. Swingley WD, Blankenship RE, Raymond, J. 2008. Insights into cyanobacterial evolution from comparative genomics, pp. 21-44 IN The Cyanobacteria: Molecular Biology, Genomics and Evolution, ed. by E. Flores, A. Herrero. Horizon Scientific Press. More book info.
  50. Swingley WD, Blankenship RE, Raymond J. 2008. Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families. Mol Biol Evol 25:643-54. PubMed abstract & fulltext, freely available 12 months after publication.
  51. Swingley WD, Chen M, Cheung PC, Conrad AL, Dejesa LC, Hao J, Honchak BM, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Miyashita H, Page L, Ramakrishna P, Satoh S, Sattley WM, Shimada Y, Taylor HL, Tomo T, Tsuchiya T, Wang ZT, Raymond J, Mimuro M, Blankenship RE, Touchman JW. 2008. Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc Natl Acad Sci U S A 105:2005-10. PubMed abstract & fulltext for subscribers, free 6 months after publication | In the news.
  52. Templeton AR. 2008. Nested clade analysis: an extensively validated method for strong phylogeographic inference. Mol Ecol 17:1877-80. PubMed citation & fulltext for subscribers.
  53. Templeton AR. 2008. The reality and importance of founder speciation in evolution. Bioessays 30:470-9. PubMed abstract & fulltext for subscribers.
  54. Thole JM, Vermeer JE, Zhang Y, Gadella TW Jr, Nielsen E. 2008. ROOT HAIR DEFECTIVE4 encodes a phosphatidylinositol-4-phosphate phosphatase required for proper root hair development in Arabidopsis thaliana. Plant Cell 20:381-95 PubMed abstract & fulltext for subscribers, free 12 months after publication.
  55. Torke BM, Schaal BA. 2008. Molecular phylogenetics of the species-rich neotropical genus Swartzia (Leguminosae, Papilionoideae) and related genera of the swartzioid clade. 95:215-228. Amer J Botany Abstract & fulltext for subscribers.
  56. Yi H, Richards EJ. 2008. Phenotypic instability of Arabidopsis alleles affecting a disease Resistance gene cluster. BMC Plant Biol 8:36. PubMed abstract & free fulltext .
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