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Washington University Department of Biology

Collected Publications - 2010

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Faculty names are in bold type.

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  1. Allan BF, Goessling LS, Storch GA, Thach RE. 2010. Blood meal analysis to identify reservoir hosts for Amblyomma americanum ticks. Emerg Infect Dis 16(3):433-40. PubMed abstract & free fulltext.
  2. Allan BF, Varns TS, Chase JM. 2010. Fear of parasites: Lone star ticks increase giving-up densities in white-tailed deer. Israel Journal of Ecology and Evolution 56(3-4):313-324. Abstract & fulltext for subscribers [WU does not subscribe but we seem to have fulltext access].
  3. Allan BF, Dutra HP, Goessling LS, Barnett K, Chase JM, Marquis RJ, Pang G, Storch GA, Thach RE, Orrock JL. 2010. Invasive honeysuckle eradication reduces tick-borne disease risk by altering host dynamics. Proc Natl Acad Sci U S A 107(43):18523-7. PubMed abstract & fulltext for subscribers, free 6 months after publication | In the news.
  4. Allen GE. 2010. Emergence of Genetic Rationality: Space, Time, and Information in American Biological Science, 1870--1920. [book review] Isis 101(1):244-246. Fulltext for subscribers.
  5. Alonso C, Vamosi JC, Knight TM, Steets JA, Ashman TL. 2010. Is reproduction of endemic plant species particularly pollen limited in biodiversity hotspots? Oikos 119(7):1192-1200. Abstract & fulltext for subscribers.
  6. Anderson CD. 2010. Effects of Movement and Mating Patterns on Gene Flow among Overwintering Hibernacula of the Timber Rattlesnake (Crotalus horridus). Copeia (1):54-61. Abstract & fulltext for BioOne.1 subscribers.
  7. Anterola A, Ham R, Perroud PF, Quatrano R. 2010. Taxane Bryotechnology: Production of Anticancer Compounds Using Transgenic Moss. [abstract] In Vitro Cell Dev Biol Anim 46 (Suppl): 95. PDF of all poster abstracts for subscribers.
  8. Aponte JC, Yang H, Vaisberg AJ, Castillo D, Malaga E, Verastegui M, Casson LK, Stivers N, Bates PJ, Rojas R, Fernandez I, Lewis WH, Sarasara C, Sauvain M, Gilman RH, Hammond GB. 2010. Cytotoxic and anti-infective sesquiterpenes present in Plagiochila disticha (Plagiochilaceae) and Ambrosia peruviana (Asteraceae).. Planta Medica 76(7):705-707. PubMed abstract & fulltext for subscribers [WU does not subscribe online].
  9. Baker DV, Withrow JR, Brown CS, Beck KG. 2010. Tumbling: Use of diffuse knapweed (Centaurea diffusa) to examine an understudied dispersal mechanism. Invasive Plant Science and Management 3(3):301-309. Abstract & fulltext for BioOne.1 subscribers.
  10. Bandyopadhyay A, Stöckel J, Min H, Sherman LA, Pakrasi HB. 2010. High rates of photobiological H(2) production by a cyanobacterium under aerobic conditions. Nat Commun 1(9):139. PubMed abstract & fulltext for subscribers.
  11. Bawa KS, Koh LP, Lee TM, Liu J, Ramakrishnan PS, Yu DW, Zhang YP, Raven PH. 2010. Ecology. China, India, and the environment. Science 327(5972):1457, 1459. PubMed citation & fulltext for subscribers.
  12. Ben-Shahar Y, Lu B, Collier DM, Snyder PM, Schnizler M, Welsh MJ. 2010. The Drosophila gene CheB42a is a novel modifier of Deg/ENaC channel function. PLoS One 5(2):e9395. PubMed abstract & free fulltext.
  13. Blackman BK, Strasburg JL, Raduski AR, Michaels SD, Rieseberg LH. 2010. The role of recently derived FT paralogs in sunflower domestication. Curr Biol 20(7):629-35. PubMed abstract & fulltext for subscribers, free 12 months after publication.
  14. Blankenship RE. 2010. Early evolution of photosynthesis. Plant Physiol 154(2):434-8. PubMed citation & fulltext for subscribers, free 12 months after publication.
  15. Blankenship R. 2010. What Limits the Efficiency of Photosynthetic Energy Storage and how Might the Efficiency of Plants be Improved? [abstract] In Vitro Cell Dev Biol Anim 46 (Suppl): 11. PDF of all speaker abstract for subscribers.
  16. Braude S. 2010. Evaluating Competing Hypotheses of Regional Biodiversity, pp.235-238 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  17. Braude S, Gaskin J. 2010. Evolution and Pesticide Resistance: Examining Quantitative Trends Visually, pp. 3-11 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  18. Braude S. 2010. Life Analysis Table, pp. 63-68 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  19. Braude S, Scherer T, McGaha R. 2010. Lotka-Volterra Competition Modeling, pp. 69-78 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  20. Braude S, Robertson J. 2010. Modeling Optimal Foraging, pp. 226-234 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  21. Braude S. 2010. Preparing and Evaluating Competitive Grant Proposals for Conservation Funding, pp. 239-244 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  22. Braude S, Robertson J. 2010. Sampling Wild Populations, pp. 189-197 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  23. Brudvig LA. 2010. Woody Encroachment Removal from Midwestern Oak Savannas Alters Understory Diversity across Space and Time. Restoration Ecol 18(1):74-84. Abstract & fulltext for subscribers.
  24. Buckley LB, Davies TJ, Ackerly DD, Kraft NJ, Harrison SP, Anacker BL, Cornell HV, Damschen EI, Grytnes JA, Hawkins BA, McCain CM, Stephens PR, Wiens JJ. 2010. Phylogeny, niche conservatism and the latitudinal diversity gradient in mammals. Proc Biol Sci 277(1691):2131-8. PubMed abstract & fulltext for subscribers, free 1 year after publication.
  25. Buckley YM, Ramula S, Blomberg SP, Burns JH, Crone EE, Ehrlén J, Knight TM, Pichancourt JB, Quested H, Wardle GM. 2010. Causes and consequences of variation in plant population growth rate: a synthesis of matrix population models in a phylogenetic context. Ecol Lett 13(9):1182-97. PubMed abstract & fulltext for subscribers.
  26. Burkle LA, Irwin RE. 2010. Beyond biomass: measuring the effects of community-level nitrogen enrichment on floral traits, pollinator visitation and plant reproduction. J Ecol 98(3):705-717. Abstract & fulltext for subscribers.
  27. Burns JH, Blomberg SP, Crone EE, Ehrlen J, Knight TM, Pichancourt JB, Ramula S, Wardle GM, Buckley YM. 2010. Empirical tests of life-history evolution theory using phylogenetic analysis of plant demography. J Ecol 98(2):334-344. Abstract & fulltext for subscribers.
  28. Cameron JC, Pakrasi HB. 2010. Essential role of glutathione in acclimation to environmental and redox perturbations in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 154(4):1672-85. PubMed abstract & freely available fulltext.
  29. Carvalho A, Delgado M, Barão A, Frescatada M, Ribeiro E, Pikaard CS, Viegas W, Neves N. 2010. Chromosome and DNA methylation dynamics during meiosis in the autotetraploid Arabidopsis arenosa. Sexual Plant Reproduction 23(1):29-37.Abstract & fulltext for subscribers.
  30. Chase JM, Burgett AA, Ciro EG. 2010. Habitat isolation moderates the strength of top-down control in experimental pond food webs. Ecology 91(3):637-643. Abstract & fulltext for subscribers.
  31. Chase JM. 2010. Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments. Science 328(5984):1388-1391. PubMed abstract & fulltext for subscribers.
  32. Chen Q, Westfall CS, Hicks LM, Wang S, Jez JM. 2010. Kinetic basis for the conjugation of auxin by a GH3 family indole acetic acid-amido synthetase. J Biol Chem. 285(39):29780-6. PubMed abstract & free fulltext.
  33. Collins AM, Kirmaier C, Holten D, Blankenship RE. 2010. Kinetics and energetics of electron transfer in reaction centers of the photosynthetic bacterium Roseiflexus castenholzii. Biochim Biophys Acta 1807(3):262-269. PubMed abstract & fulltext for subscribers.
  34. Collins AM, Qian P, Tang Q, Bocian DF, Hunter CN, Blankenship RE. 2010. Light-harvesting antenna system from the phototrophic bacterium Roseiflexus castenholzii. Biochemistry 49(35):7524-31. PubMed abstract & fulltext for subscribers, free 12 months after publication.
  35. Collins AM, Redding KE, Blankenship RE. 2010. Modulation of fluorescence in Heliobacterium modesticaldum cells. Photosynth Res 104(2-3):283-292. PubMed abstract & fulltext for subscribers.
  36. Costa-Nunes P, Pontes O, Preuss SB, Pikaard CS. 2010. Extra views on RNA-dependent DNA methylation and MBD6-dependent heterochromatin formation in nucleolar dominance. Nucleus 1(3):254-259. PubMed abstract & freely available fulltext.
  37. Coventry A, Bull-Otterson LM, Liu X, Clark AG, Maxwell TJ, Crosby J, Hixson JE, Rea TJ, Muzny DM, Lewis LR, Wheeler DA, Sabo A, Lusk C, Weiss KG, Akbar H, Cree A, Hawes AC, Newsham I, Varghese RT, Villasana D, Gross S, Joshi V, Santibanez J, Morgan M, Chang K, Iv WH, Templeton AR, Boerwinkle E, Gibbs R, Sing CF. 2010. Deep resequencing reveals excess rare recent variants consistent with explosive population growth. Nat Commun 1(8):131. PubMed abstract & freely available fulltext.
  38. Coyle DR, Aubrey DP, Hickman CR, Coleman M. 2010. Not sure about a PhD? Work on a "pre-PhD" Frontiers Ecol Environ 8(2):105-106. Fulltext for subscribers.
  39. Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ. 2010.Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14679-84. PubMed abstract & freely available fulltext.
  40. Dai S, Petruccelli S, Ordiz MI, Zhang Z, Chen S, Beachy RN. 2010. Functional analysis of RF2a, a rice transcription factor. J Biol Chem 278(38):36396-402. PubMed abstract & freely available fulltext
  41. Damschen EI, Harrison S, Grace JB. 2010. Climate change effects on an endemic-rich edaphic flora: resurveying Robert H. Whittaker's Siskiyou sites (Oregon, USA). Ecology 91(12):3609-3619. Abstract & fulltext for subscribers.
  42. Dangremond EM, Pardini EA, Knight TM. 2010. Apparent competition with an invasive plant hastens the extinction of an endangered lupine. Ecology 91(8):2261-2271. Abstract & fulltext for subscribers | In the news.
  43. Dickson TL, Mitchell CE. 2010. Herbivore and fungal pathogen exclusion affects the seed production of four common grassland species. PLoS One 5(8):e12022. PubMed abstract & free fulltext.
  44. Dixit R, Ross JL. 2010. Studying plus-end tracking at single molecule resolution using TIRF microscopy. Methods Cell Biol 95:543-54. PubMed abstract & fulltext for subscribers.
  45. Duncan D, Kiefel P, Duncan I. 2010. Control of the spineless antennal enhancer: Direct repression of antennal target genes by Antennapedia. Dev Biol 347(1):82-91. PubMed abstract & fulltext for subscribers.
  46. Earley KW, Pontvianne F, Wierzbicki AT, Blevins T, Tucker S, Costa-Nunes P, Pontes O, Pikaard CS. 2010. Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. Genes Dev 24(11):1119-32. PubMed abstract & fulltext for subscribers, freely available 6 months after publication.
  47. Elvitigala, TR; Polpitiya, AD; Wang, WX; Stockel, J; Khandelwal, A; Quatrano, RS; Pakrasi, HB; Ghosh, BK. 2010. High-Throughput Biological Data Analysis A STEP TOWARD UNDERSTANDING CELLULAR REGULATION. IEEE CONTROL SYSTEMS MAGAZINE 30(6):81-100. Abstract & fulltext for subscribers.
  48. Engineer CB, Braude S. 2010. Quantifying Biodiversity, pp. 198-213 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  49. Eren EC, Dixit R, Gautam N. 2010. A 3D Computer Simulation Model Reveals the Mechanisms for Self-Organization of Plant Cortical Microtubules into Oblique Arrays. Mol Biol Cell 21(15):2674-84. PubMed abstract & freely available fulltext.
  50. Fedoroff NV, Battisti DS, Beachy RN, Cooper PJ, Fischhoff DA, Hodges CN, Knauf VC, Lobell D, Mazur BJ, Molden D, Reynolds MP, Ronald PC, Rosegrant MW, Sanchez PA, Vonshak A, Zhu JK. 2010. Radically rethinking agriculture for the 21st century. Science 327(5967):833-4. PubMed abstract & fulltext for subscribers.
  51. Feng X, Page L, Rubens J, Chircus L, Colletti P, Pakrasi HB, Tang YJ. 2010. Bridging the gap between fluxomics and industrial biotechnology. J Biomed Biotechnol 2010:460717. PubMed abstract & freely available fulltext.
  52. Feng X, Tang KH, Blankenship RE, Tang YJ. 2010. Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum. J Biol Chem. 285(50):39544-50. PubMed abstract & fulltext for subscribers, freely available 12 months after publication.
  53. Feng X, Banerjee A, Berla B, Page L, Wu B, Pakrasi HB, Tang YJ. 2010. Mixotrophic and photoheterotrophic metabolisms in Cyanothece sp. ATCC 51142 under continuous light. Microbiology 156(Pt 8):2566-74. PubMed abstract & fulltext for subscribers, freely available 12 months after publication.
  54. Gao X, Xin Y, Bell PD, Wen J, Blankenship RE. 2010. Structural Analysis of Alternative Complex III in the Photosynthetic Electron Transfer Chain of Chloroflexus aurantiacus. Biochemistry 49(31):6670-9. PubMed abstract & fulltext for subscribers, freely available 12 months after publication.
  55. Gao Z, Liu HL, Daxinger L, Pontes O, He X, Qian W, Lin H, Xie M, Lorkovic ZJ, Zhang S, Miki D, Zhan X, Pontier D, Lagrange T, Jin H, Matzke AJ, Matzke M, Pikaard CS, Zhu JK. 2010. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 465(7294):106-9. PubMed abstract & fulltext for subscribers.
  56. Gross BL, Olsen KM. 2010. Genetic perspectives on crop domestication. Trends Plant Sci 15(9):529-37. PubMed abstract & fulltext for subscribers | In the news.
  57. Gross BL, Steffen FT, Olsen KM. 2010. The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene. J Evol Biol 23(12):2747-53. PubMed abstract & fulltext for subscribers.
  58. Gross BL, Reagon M, Hsu SC, Caicedo AL, Jia Y, Olsen KM. 2010. Seeing red: the origin of grain pigmentation in US weedy rice. Mol Ecol 19(16):3380-3393. PubMed abstract & fulltext for subscribers.
  59. Harmon LJ, Braude S. 2010. Conservation of Small Populations: Effective Population Sizes, Inbreeding, and the 50/500 Rule, pp. 125-138 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  60. Hayes D, Panitchayangkoon G, Fransted KA, Caram JR, Wen JZ, Freed KF, Engel GS. 2010. Dynamics of electronic dephasing in the Fenna-Matthews-Olson complex. New J Physics 12: Art. No. 065042. Freely available fulltext.
  61. Heldermon CD, Ohlemiller KK, Herzog ED, Vogler C, Qin E, Wozniak DF, Tan Y, Orrock JL, Sands MS. 2010. Therapeutic Efficacy of Bone Marrow Transplant, Intracranial AAV-mediated Gene Therapy, or Both in the Mouse Model of MPS IIIB. Mol Ther 18(5):873-80. PubMed abstract & fulltext for subscribers.
  62. Herzog ED, Taghert PH. 2010. Circadian Neural Networks. pp.179-194 IN The Circadian Clock, ed. U. Albrecht. Springer. (Protein Reviews, v.12) Abstract & fulltext for Springerlink Biomedical & Life Ebook subcribers.
  63. Higashi Y, Smith TJ, Jez JM, Kutchan TM. 2010. Crystallization and preliminary X-ray diffraction analysis of salutaridine reductase from the opium poppy Papaver somniferum. Acta Crystallogr Sect F Struct Biol Cryst Commun 66(Pt 2):163-6. Abstract & fulltext for subscribers.
  64. Hochberg Z, Templeton AR. 2010. Evolutionary perspective in skin color, vitamin D and its receptor. Hormones (Athens) 9(4):307-11. PubMed citation & free fulltext
  65. Hokanson KE, Ellstrand NC, Ouedraogo JT, Olweny PA, Schaal BA, Raybould AF. 2010. Biofortified sorghum in Africa: using problem formulation to inform risk assessment. Nat Biotechnol 28(9):900-3. PubMed abstract & fulltext for subscribers.
  66. Jacquart EM, Knight TM. 2010. Are there non-invasive cultivars of buckthorn? Indiana Nursery and Landscape News 70(3):16-17. Fulltext.
  67. Johnson JC, Christian RR, Brunt JW, Hickman CR, Waide RB. 2010. Evolution of Collaboration within the US Long Term Ecological Research Network. Bioscience 60(11):931-940. Abstract & fulltext for BioOne subscribers.
  68. Kaewsuwan S, Bunyapraphatsara N, Cove DJ, Quatrano RS, Chodok P. 2010. High level production of adrenic acid in Physcomitrella patens using the algae Pavlova sp. Delta(5)-elongase gene. Bioresour Technol 101(11):4081-4088. PubMed abstract & fulltext for subscribers.
  69. Kern M, Scheithauer J, Kranz RG, Simon J. 2010. Essential histidine pairs indicate conserved haem binding in epsilonproteobacterial cytochrome c haem lyases. Microbiology 156(Pt 12):3773-81. PubMed abstract & fulltext for subscribers, freely available 12 months after publication.
  70. Kern M, Eisel F, Scheithauer J, Kranz RG, Simon J. 2010. Substrate specificity of three cytochrome c haem lyase isoenzymes from Wolinella succinogenes: unconventional haem c binding motifs are not sufficient for haem c attachment by NrfI and CcsA1. Mol Microbiol 75(1):122-37. PubMed abstract & fulltext for subscribers; free 18 months after publication.
  71. Khandelwal A, Cho SH, Marella H, Sakata Y, Perroud PF, Pan A, Quatrano RS. 2010. Role of ABA and ABI3 in desiccation tolerance. Science 327(5965):546. PubMed abstract & fulltext for subscribers.
  72. Kim MJ, Ciani S, Schachtman DP. 2010. A peroxidase contributes to ros production during Arabidopsis root response to potassium deficiency. Molecular Plant 3(2):420-427. Abstract & fulltext for subscribers, freely available 1 year after publication [WU does not subscribe].
  73. Klein GP, Christopher CC, Cameron GN, Barrett GW. 2010. Effect of bot fly parasitism on vertical habitat use by peromyscus leucopus. Northeastern Naturalist 17(2):223-228. Abstract & fulltext for BioOne 1 subscribers.
  74. Law W, Salick J, Knight TM. 2010. The effects of pollen limitation on population dynamics of snow lotus (Saussurea medusa and S. laniceps, Asteraceae): Threatened Tibetan medicinal plants of the eastern Himalayas. Plant Ecology 210(2):343-357. Abstract & fulltext for subscribers.
  75. Leung W, Shaffer CD, Cordonnier T, Wong J, Itano MS, Slawson Tempel EE, Kellmann E, Desruisseau DM, Cain C, Carrasquillo R, Chusak TM, Falkowska K, Grim KD, Guan R, Honeybourne J, Khan S, Lo L, McGaha R, Plunkett J, Richner JM, Richt R, Sabin L, Shah A, Sharma A, Singhal S, Song F, Swope C, Wilen CB, Buhler J, Mardis ER, Elgin SC. 2010. Evolution of a Distinct Genomic Domain in Drosophila: Comparative Analysis of the Dot Chromosome in Drosophila melanogaster and Drosophila virilis. Genetics 185(4):1519-34. PubMed abstract & fulltext for subscribers; freely available 6 months after publication.
  76. Lewis WH, Ertter B. 2010. Rosa woodsii subsp puberulenta and variety ertterae (Rosaceae), New in Western North America. Novon 20(1):47-52. Abstract & fulltext for BioOne.1 subscribers.
  77. Loayza AP, Knight T. 2010. Seed dispersal by pulp consumers, not "legitimate" seed disperses, increases Guettarda viburnoides population growth. Ecology 91(9):2684-2695. Abstract & fulltext for subscribers.
  78. Low BS, Braude S. 2010. Environmental Predictability and Life History. pp. 214-225 IN An Introduction to Methods and Models in Ecology, Evolution, and Conservation Biology, ed. by Stanton Braude & Bobbi S. Low. Princton Univ. Press. More book info.
  79. Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, Touchman JW. 2010. Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. BMC Genomics. 11(1):325. PubMed abstract & free fulltext.
  80. McDaniel SF, von Stackelberg M, Richardt S, Quatrano RS, Reski R, Rensing SA. 2010. The speciation history of the Physcomitrium-Physcomitrella species complex. Evolution 64(1):217-231. PubMed abstract & fulltext for subscribers.
  81. Matsuda A, Shieh AW, Chalker DL, Forney JD. 2010. The conjugation-specific Die5 protein is required for development of the somatic nucleus in both Paramecium and Tetrahymena. Eukaryot Cell 9(7):1087-99. Abstract & fulltext for subscribers, freely available 6 months after publication.
  82. Mattos KJ, Orrock JL. 2010. Behavioral consequences of plant invasion: An invasive plant alters rodent antipredator behavior. Behavioral Ecology 21(3):556-561. Abstract & fulltext for subscribers, freely available 1 year after publication.
  83. Modesto-Lopez LB, Thimsen EJ, Collins AM, Blankenship RE, Biswas P. 2010. Electrospray-assisted characterization and deposition of chlorosomes to fabricate a biomimetic light-harvesting device. Energy Environ Sci 3:216-222 Abstract & fulltext for subscribers.
  84. The modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, Macalpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, Macalpine DM, Stein LD, White KP, Kellis M. 2011. Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE. Science 330(6012):1787-1797. PubMed abstract & fulltext for subscribers.
  85. Montiel OM, Raven PH. 2010. Alan Graham—Recipient of the 2009 Asa Gray Award. Systematic Botany 35(1):2-3. Fulltext for BioOne.1 subscribers.
  86. Motheral SM, Orrock JL. 2010. Gastropod herbivore preference for seedlings of two native and two exotic grass species. American Midland Naturalist 163(1): 106–114. Abstract & fulltext for BioOne subcribers.
  87. Murray DL, Anderson MG, Steury TD. 2010. Temporal shift in density dependence among North American breeding duck populations. Ecology 91(2):571-581. Abstract & fulltext for subscribers.
  88. Niedzwiedzki DM, Blankenship RE. 2010. Singlet and triplet excited state properties of natural chlorophylls and bacteriochlorophylls. Photosynth Res 106(3):227-38. PubMed abstract & fulltext for subscribers.
  89. Niedzwiedzki DM, Collins AM, Lafountain AM, Enriquez MM, Frank HA, Blankenship RE. 2010. Spectroscopic Studies of Carotenoid-to-Bacteriochlorophyll Energy Transfer in LHRC Photosynthetic Complex from Roseiflexus castenholzii. J Phys Chem B 114(26):8723-34. PubMed abstract & fulltext for subscribers.
  90. Ng IS, Li CW, Chan SP, Chir JL, Chen PT, Tong CG, Yu SM, Ho TH. 2010. High-level production of a thermoacidophilic beta-glucosidase from Penicillium citrinum YS40-5 by solid-state fermentation with rice bran. Bioresour Technol 101(4):1310-7. PubMed abstract & fulltext for subscribers.
  91. Ordiz MI, Yang J, Brad Barbazuk W, Beachy RN. Functional analysis of the activation domain of RF2a, a rice transcription factor. 2010. Plant Biotechnol J 8(7):835-44. PubMed abstract & fulltext for subscribers.
  92. Ordiz MI, Magnenat L, Barbas CF 3rd, Beachy RN. 2010. Negative regulation of the RTBV promoter by designed zinc finger proteins. Plant Mol Biol 72(6):621-30. PubMed abstract & fulltext for subscribers.
  93. Orrock JL, Christopher CC. 2010. Density of intraspecific competitors determines the occurrence and benefits of accelerated germination. Am J Botany 97(4):694-699. Abstract & fulltext for subscribers, free 12 months after publication.
  94. Orrock JL, Watling JI. 2010. Local community size mediates ecological drift and competition in metacommunities. Proc Biol Sci 277(1691):2185-91. PubMed abstract & fulltext for subscribers, free 1 year after publication.
  95. Orrock JL, Witter MS. 2010. Multiple drivers of apparent competition reduce re-establishment of a native plant in invaded habitats. Oikos 119(1):101-108. Abstract & fulltext for subscribers.
  96. Orrock JL, Dill LM, Sih A, Grabowski JH, Peacor SD, Peckarsky BL, Preisser EL, Vonesh JR, Werner EE. 2010. Predator effects in predator-free space: The remote effects of predators on prey. Open Ecology Journal 3(SPEC.ISS.2):22-30. Abstract & freely available fulltext.
  97. Orrock JL, Holt RD, Baskett ML. 2010. Refuge-mediated apparent competition in plant-consumer interactions. Ecol Lett 13(1):11-20. PubMed abstract & fulltext for subscribers.
  98. Orrock JL, Baskett ML, Holt RD. 2010. Spatial interplay of plant competition and consumer foraging mediate plant coexistence and drive the invasion ratchet. Proc Biol Sci 277(1698):3307-15. PubMed abstract & fulltext for subscribers, free 1 year after publication.
  99. Orrock JL. 2010. When the Ghost of Predation has Passed: Do Rodents from Islands with and without Fox Predators Exhibit Aversion to Fox Cues? Ethology 116(4):338-345. Abstract & fulltext for subscribers [WU does not subscribe].
  100. Panitchayangkoon G, Hayes D, Fransted KA, Caram JR, Harel E, Wen J, Blankenship RE, Engel GS. 2010. Long-lived quantum coherence in photosynthetic complexes at physiological temperature. Proc Natl Acad Sci U S A 107(29):12766-70. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  101. Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, Hellsten U, Chapman J, Simakov O, Rensing SA, Terry A, Pangilinan J, Kapitonov V, Jurka J, Salamov A, Shapiro H, Schmutz J, Grimwood J, Lindquist E, Lucas S, Grigoriev IV, Schmitt R, Kirk D, Rokhsar DS. 2010. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science 329(5988):223-6. PubMed abstract & fulltext for subscribers | In the news.
  102. Ratajczak CK, Herzog ED, Muglia LJ. 2010. Clock gene expression in gravid uterus and extra-embryonic tissues during late gestation in the mouse. Reprod Fertil Dev 22(5):743-50. PubMed abstract | Fulltext for subscribers.
  103. Reagon M, Thurber CS, Gross BL, Olsen KM, Jia Y, Caicedo AL. 2010. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evol Biol 10(1):180. PubMed abstract & free fulltext.
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  152. Wu B, Zhang B, Feng X, Rubens JR, Huang R, Hicks LM, Pakrasi HB, Tang YJ. 2010. Alternate Isoleucine Synthesis Pathway in Cyanobacterial Species. Microbiology 156(Pt 2):596-602. PubMed abstract & fulltext for subscribers, free 12 months after publication.
  153. Yi H, Ravilious GE, Galant A, Krishnan HB, Jez JM. 2010. From sulfur to homoglutathione: thiol metabolism in soybean. Amino Acids 39(4):963-78. PubMed abstract & fulltext for subscribers.
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